PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00741.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 273aa    MW: 29734.4 Da    PI: 6.7196
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00741.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.3e-053786154
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    r++ + erE+  Rd++N+ f eL  +l  +     + + Ka iL+ +++ +++L
  Pahal.B00741.1 37 RKVHKAEREKLKRDHLNDLFVELGNMLEAD----RQNNGKACILTDTTRILRDL 86
                    677889*********************997....57788888988888887776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.4743686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-836105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-1036105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.30E-43791No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MVPSERGSVA TAVSTAAADK LLHGPITGKK CKKAAPRKVH KAEREKLKRD HLNDLFVELG  60
NMLEADRQNN GKACILTDTT RILRDLLVQV ESLRKEHSNL QNESHYVAIE RNELQDENGV  120
LRKEISELQD ELRMRSSSNP AGWGHGTAGL NPSVLNPASA VFSSQQAMQP PTIASTIFPM  180
QQPLAPSAVI EHPYATPPPL ELKLFPGAAS VEVCKPSEDQ EAPNHVARPQ ARYPTQSASW  240
PVTLFSGLPR MEDEQCSSST TSSSKEASTD RD*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984211.11e-166PREDICTED: transcription factor bHLH47-like
TrEMBLK4ADQ91e-166K4ADQ9_SETIT; Uncharacterized protein
STRINGSi037016m1e-165(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.31e-28bHLH family protein